Claude Code for Research Papers [R]

Third-year PhD student, NLP / interpretability. I want a reality check from people doing similar work.

I started using Claude Code for the boring parts: argparse boilerplate, plotting, config wrangling. Over the last few months the scope has crept. It now writes most of my experiment scaffolding, refactors my dataloaders, does first-pass debugging on training runs, and drafts the analysis scripts. I mostly read diffs and say yes.

The output is fine. My throughput is up. The thing bothering me is that I no longer hold my own codebase in my head. When a result looks off, I used to have an instinct about which line was lying to me. Now I go hunting like it’s someone else’s repo. I catch bugs later than I used to, and I catch them by reasoning about the numbers rather than by knowing the code.

I don’t think the tool is the problem. I think I delegated a layer that was doing more for my understanding than I gave it credit for.

Questions for people further along or in the same spot:

1. Roughly what fraction of your research code do you write yourself now?

2. Is there anything you deliberately refuse to hand off? (For me I think the eval harness and anything defining a metric should stay mine, but I keep breaking my own rule.)

3. Does anyone have a workflow that keeps the speedup without the detachment? Reading the diff line by line is not cutting it.

Not looking for a “tools are just tools” answer. I’m asking about the specific feeling of not owning your own experiments anymore.